PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G29696
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 460aa    MW: 53423.3 Da    PI: 4.4997
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G29696genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.16.5e-181299399
                 EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                 k   p d ++++ l +p++f+ ++ g+ ++    +l++   r+W v +  +   ++++++kGW++Fv++ngLk g+f+vF++ g+sef  +v +f k
  Ro01_G29696 12 KLH-PGDQFSNK-LKIPREFLHHFHGNVPQ--HCRLQT-PARTWLVDV--EEVNNKFYFQKGWNQFVQDNGLKYGEFLVFHYAGNSEF--HVDIFGK 99
                 544.55666665.********666656455..488777.569******..999999****************************9999..***9987 PP
2B343.46.1e-141372251398
                  TT-EE--HHH.HTT.---..--SEEEEEETTS..-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
           B3  13 sgrlvlpkkfaeeh.ggkkeesktltledesg..rsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                  +   +lp +f+     +++ +s +++l+ ++g  r+W+ kl+  +   +r  l +GW +Fv++n+L+egD++vF+l+++ +     v +fr
  Ro01_G29696 137 RTSSWLPSEFTMLVrPLIE-NSGDVILRVSDGrvRTWQTKLTCeNLATNRSKLHGGWFKFVQENNLEEGDVCVFMLIKDiRVL-IEVVIFR 225
                  4445778888744463333.33356666666655*******88755666678************************9984443.6666666 PP
3B335.91.4e-113494251898
                  --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  lp +fa+ h ++++++  ltl   +   W+vk+  +  ++ + l++GW+eFv+ n+Lk gD +vF l++  +f++ v +fr
  Ro01_G29696 349 LPWSFAKIH-LINQQPGHLTLWV-KRSFWSVKV--NYLGRITRLQAGWSEFVRVNNLKMGDACVFVLSNAIKFHYDVEIFR 425
                  666777555.2333444455443.5578*****..55555577***********************998899999999997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    
MATRRKLPSF FKLHPGDQFS NKLKIPREFL HHFHGNVPQH CRLQTPARTW LVDVEEVNNK  60
FYFQKGWNQF VQDNGLKYGE FLVFHYAGNS EFHVDIFGKN TCKKMFAVPE VEEADDVSLE  120
ILDNSPLSSP LPDKMNRTSS WLPSEFTMLV RPLIENSGDV ILRVSDGRVR TWQTKLTCEN  180
LATNRSKLHG GWFKFVQENN LEEGDVCVFM LIKDIRVLIE VVIFRTKDAA NCTFDHDSSD  240
DDDDDDDDDE EEEEEEEEEE EEEEEEEEEE DEEEDEEEDE EEEEEEKGDD SSETFDHFPP  300
CSRTMEKSSL ASRLHKRRRN RTSSSPKAQS NLKDAGGLFR EEIILKANLP WSFAKIHLIN  360
QQPGHLTLWV KRSFWSVKVN YLGRITRLQA GWSEFVRVNN LKMGDACVFV LSNAIKFHYD  420
VEIFRMADAV CTSSQGEGKQ PISHSTWKFK TESKIDEIAT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.11e-20B3 family protein