PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G29779
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 134aa    MW: 15345.3 Da    PI: 6.5266
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G29779genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.7e-094089347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +WT eE+e l+ +v+++G+  Wk I +          R+  +++++w+++
      Ro01_G29779 40 SWTMEEEEALAAGVAKHGMSKWKHILEDPEfrpvlAIRSCRSLVNKWRNL 89
                     7*************************999888777667777777777775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    
MTMSPKVNRV VTAHLEAINV SSRNESASAE RKKRGITGTS WTMEEEEALA AGVAKHGMSK  60
WKHILEDPEF RPVLAIRSCR SLVNKWRNLT DRVSEEKLSR MSYEVRKVVN AYLRHEILDD  120
PAEAVEEETE TEYT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.16e-15MYB_related family protein