PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G29781
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 148aa    MW: 16994.2 Da    PI: 10.3329
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G29781genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.4e-101260346
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +WT+ E+e l+ +v ++G g Wk I +         +R+  ++k++w+ 
      Ro01_G29781 12 KWTAKEEEALLAGVVKHGVGKWKIILEDSEfgpflSHRSNRNLKDKWRR 60
                     8****************************999***9***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    
MEGEGKSQRP PKWTAKEEEA LLAGVVKHGV GKWKIILEDS EFGPFLSHRS NRNLKDKWRR  60
LSRLGGTSTV RTCGNYKPWR RLSVRTWANY KPFRAAEALK EAQTISETNE AQTISETNEA  120
QRISKPADQD TESMLQLASQ IYERCSRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.24e-20MYB_related family protein