PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G29921
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WRKY
Protein Properties Length: 187aa    MW: 21736.7 Da    PI: 9.7863
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G29921genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1053.9e-33110168159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H+h+
  Ro01_G29921 110 LDDGYKWRKYGQKVVKNTQHPRSYYRCTMDNCRVKKRVERLAEDPRMVITTYEGRHQHS 168
                  59********************************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    
MASTPSQAML NQQGLFDQNQ DQAPIQMGFF SYPTNNLTFS STPTPFFAEI KCKSLVSECL  60
SSKRSSSDIH DHHHVGLGVS AMKMKKIKAI RRKVREPRFC FKTMSEVDVL DDGYKWRKYG  120
QKVVKNTQHP RSYYRCTMDN CRVKKRVERL AEDPRMVITT YEGRHQHSPS HDLEDSQSPS  180
HLNNFFW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-55WRKY family protein