PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G30094
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB
Protein Properties Length: 268aa    MW: 31464.6 Da    PI: 9.3484
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G30094genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-163077148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEdell +  k +G g+W+ ++++ g++R++k+c++rw++yl
      Ro01_G30094 30 KGAWTREEDELLRHSMKIHGEGNWHQVPSKAGLNRCRKSCRLRWLNYL 77
                     79********************************************97 PP
2Myb_DNA-binding49.88.1e-1683126146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g +T++E +l+ +++k+lG++ W++Ia +++ gRt++++k++w++
      Ro01_G30094  83 KGDFTEDEADLIFRLHKLLGNR-WSLIAGRLP-GRTGNHVKNYWNS 126
                      689*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MEMRICFKMR IREMQCGDRR ACKTKSGVRK GAWTREEDEL LRHSMKIHGE GNWHQVPSKA  60
GLNRCRKSCR LRWLNYLKPN IKKGDFTEDE ADLIFRLHKL LGNRWSLIAG RLPGRTGNHV  120
KNYWNSRRRL DSVMKDKSPE TTKTMIIRPR PRTFSKSSYF LNNKASILEP SQFAENCGRS  180
SQTSPPGENE INWSKILLDD MDSNTVERRT TSESWCLGFE EDLFTNFWDE DMAQSTRTGL  240
KFTEGEQSNK DFCLNVELWN HSNEEERT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.17e-53MYB family protein