PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G00510
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 374aa    MW: 41456.5 Da    PI: 4.7176
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G00510genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.6e-102993391055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Ro02_G00510 299 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 339
                  9******************97.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    
MESLGVFADG DQWECFSRLF SNEDQELDFT SHFLGHEGSF PFQHNEGFNF ETPADLCPDP  60
QAGDEMGLNR FNQSLFHSLD TNMHHLPQEN NTCYRTSSGI FTAILNPENY YFGGNSCHTP  120
MSNDISTSID VSMTGNENNF GSFIPVFTDF GVEGAVCNNE DSGSGKLGNS DDSQPAKELP  180
LKRMHDVAEE KSNTDNASES NPKKKPRLSK DKTKKSNARP KKGQKANSDV KVKDEEESNA  240
GADRQSSSSY NSSEDDNASQ ETNGAGETSD PKSASALNLN GKTRANRGSA TDPQSLYARK  300
RRERINERLR ILQNLVPNGT KVDISTMLEE AVHYVKFLQL QIKLLSSDDM WMYAPIAYNG  360
MDIGLDLQKM TPLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.16e-47bHLH family protein