PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G00512
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C2H2
Protein Properties Length: 260aa    MW: 27906.9 Da    PI: 8.5986
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G00512genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.0002496118123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ C+k F++   L  H  +H
  Ro02_G00512  96 YKCSVCDKAFPSYQALGGHKASH 118
                  9***********99999998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MALEALSSPT AAGQAFHYEE PKLHYSEPWT KRKRSKRPRS LDQTQVSEEE YLALCLIMLA  60
RGGRDAASHR SQSPIPTIPV VEQATSAPAK ENQLSYKCSV CDKAFPSYQA LGGHKASHRK  120
GSSATIGGEG PSTSSTTTTT SAATVSHNAS GRSHECSICH KSFPTGQALG GHKRCHYEGG  180
ATATRSAATT SAVTSSEGVG STTHTVSQSQ HRETFDLNLP AFPEPLSRNF FHSGDDEVES  240
PHPTKKPRLF MTPKVEISLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-53C2H2 family protein