PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G00564

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 306aa MW: 33530.8 Da PI: 8.6366

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G00564	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.4	8e-19	15	60	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+ +G+++W++I++ ++ gR++k+c++rw + Ro02_G00564 15 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 60 79****************************.*********985 PP
2	Myb_DNA-binding	54.8	2.2e-17	69	111	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+ +++a++++G++ W+tI+r ++ gRt++ +k++w++ Ro02_G00564 69 PFTPEEDDAIIRAHARFGNK-WATISRLLN-GRTDNAIKNHWNST 111 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence
MASSSTKKAA ADRIKGPWSP EEDEALQRLV QNYGPRNWSL ISKSIPGRSG KSCRLRWCNQ 60 LSPEVEHRPF TPEEDDAIIR AHARFGNKWA TISRLLNGRT DNAIKNHWNS TLKRKFLSMS 120 DDMTPEQPLK RSASVGAGTT VSGLYMNPGS PSGSDLSDSS LPGVIPPPSQ AFRHMTITRP 180 ITPPPEVSTL AVDPPTSLSL SLPGFNNCEG SNHQRSGSGS GSSWIDSPTP KVQPQPQDQD 240 DAAGVPCQEM GIDKQLFSAE LLDVMQDMIR KEVKNYMSGI EHKGMFMHTE AIRNAVVKRI 300 GITKVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	9e-78	MYB family protein