PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G00578

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 432aa MW: 49414.7 Da PI: 6.3694

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G00578	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00034	155	178	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++ +L++H + H Ro02_G00578 155 YICGVCGRKCKSNLDLTKHFKQlH 178 89*****************98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MNPIHTTLLP SVPCYNKALP LVFLNSSQSP FFNSPQILRP KPSSSISLNR RWRSYAAANS 60 EIDMVRNKQG IYTPKQKKVV VLWDLDNKPP RGPPYQAAMA LKQVAQHLGE VVDVSAYANR 120 HAFIHLPHWV VEQRRERKQL DILERKGILT PPEPYICGVC GRKCKSNLDL TKHFKQLHER 180 ERQKKLNRMR SLKGKKRQRF KERFISGNHK YNEAASTLIK PKVGYGLASE LRRAGVFVKT 240 VEDKPQAADW ALKRQMQHSM SRGIDWLFLV SDDSDFSDML RKAREASLGT VVVGDWDRAL 300 GRHADVWVPW TGVENGEISD KDLVPKRRRS DFFDEDEDEE DDVSLFSDLG FGGGTELDNV 360 VDDLVGARSQ GSGGIRISAF SEGEVEQGDW EEDYEDEDYL SEDSEDEDGE FMWQPQQLST 420 RFIVDFIVVT DM

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MNPIHTTLLP SVPCYNKALP LVFLNSSQSP FFNSPQILRP KPSSSISLNR RWRSYAAANS  60
EIDMVRNKQG IYTPKQKKVV VLWDLDNKPP RGPPYQAAMA LKQVAQHLGE VVDVSAYANR  120
HAFIHLPHWV VEQRRERKQL DILERKGILT PPEPYICGVC GRKCKSNLDL TKHFKQLHER  180
ERQKKLNRMR SLKGKKRQRF KERFISGNHK YNEAASTLIK PKVGYGLASE LRRAGVFVKT  240
VEDKPQAADW ALKRQMQHSM SRGIDWLFLV SDDSDFSDML RKAREASLGT VVVGDWDRAL  300
GRHADVWVPW TGVENGEISD KDLVPKRRRS DFFDEDEDEE DDVSLFSDLG FGGGTELDNV  360
VDDLVGARSQ GSGGIRISAF SEGEVEQGDW EEDYEDEDYL SEDSEDEDGE FMWQPQQLST  420
RFIVDFIVVT DM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-168	C2H2 family protein