PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G00581

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WOX

Protein Properties

Length: 237aa MW: 26751.2 Da PI: 9.217

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G00581	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.5	1.8e-21	93	152	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ Ro02_G00581 93 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITAQLgkygKIEGKNVFYWFQNHKARERQ 152 7***************99************************************97 PP
2	Wus_type_Homeobox	118.3	3.3e-38	93	154	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L +yGkie+kNVfyWFQN+kaRerqkq Ro02_G00581 93 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 154 8***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MGMSSMKVHQ FARGLWDSPT TTLEPSLTLG CKRLRPLAPK LADTTTTTTT LAPFDLKSFI 60 RPESGPRNKL ASPHEHEKKD SSHSQVEMHP GGTRWNPTQE QIGILEMLYR GGMRTPNAQQ 120 IEQITAQLGK YGKIEGKNVF YWFQNHKARE RQKQKRSTLG LTHSPRTPTP VITTTVSNSN 180 TAGEVLEREE DSPYKRKCRS WAFDCLAEDS STITCNNDVV EGDRTLELFP LHPEGMR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	3e-69	WOX family protein