PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G00584
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 350aa    MW: 38579.1 Da    PI: 6.3485
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G00584genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.14.8e-16142188455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn+ E+rRR++iN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Ro02_G00584 142 VHNQSEKRRRSKINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 188
                  6*************************7.....5******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    
MADLYGTPPD SEEISNILSQ LLHGSSSSSS FCMPYKATTY MHLLHSSVPP PHTTSSQEDH  60
RMLGQSEDRR VSAPSDFNFS DSAGMKECGD SDANTCLKGR RVSWENDLGD VSCDSEGPEA  120
SEVPLTPAPP RSSSKRSRAA EVHNQSEKRR RSKINEKMKA LQNLIPNSNK TDKASMLDEA  180
IEYLKQLQLQ VQMLTMRNGL SLHPMCLSGV MQPVQLPHMG LGFEEGSNKV PKSSREINTF  240
YGSEENSMQS VYNISSGCRI SNQPMVIPSI VNVPTSEASF IFEPSTQAHY RPFIATTPSK  300
ELLFGDSEPP SKSDSNRTGK NSSSDVDKVT SKRHEVLFVQ TRNCPDPPNC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.14e-39bHLH family protein