PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G00592

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HSF

Protein Properties

Length: 394aa MW: 43860.4 Da PI: 8.0778

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G00592	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	115.2	4e-36	26	118	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ Fkkg+k+ll++i+ Ro02_G00592 26 FLTKTYQLVDDPSTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHLLCEIH 113 9***************************************************************99.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ Ro02_G00592 114 RRKTA 118 986 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MALMIDNCGE GILLSLDSHK SVPAPFLTKT YQLVDDPSTD HIVSWGEDDT TFVVWRPPEF 60 ARDLLPNYFK HNNFSSFVRQ LNTYGFRKIV PDRWEFANEF FKKGEKHLLC EIHRRKTAQP 120 TQLPMNHHHH HHHQYPHSPL GGHQVVTAPG FFPFPPSRGS NSPSDSDDQL PNWCDSPPPL 180 ISSPPCGGGG GPPTCNYNGN VATTTVTALS EDNERLRRSN TMLMSELNHM RKLYNDIIYF 240 VQNHVKPVAP SNSYPTSLLV CNPSPAAALN PNSSAAIHKP FNQVLGYYSG NPKQTQPMNH 300 VNVMMNNSNV SSPSTTTSKS NSSLTILDDP PSNNISNSGC KTKLFGVPLL HSKKRLHPEY 360 NNGSNQTVME ASKARLILEK DHDLGLHLMP PSKC

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MALMIDNCGE GILLSLDSHK SVPAPFLTKT YQLVDDPSTD HIVSWGEDDT TFVVWRPPEF  60
ARDLLPNYFK HNNFSSFVRQ LNTYGFRKIV PDRWEFANEF FKKGEKHLLC EIHRRKTAQP  120
TQLPMNHHHH HHHQYPHSPL GGHQVVTAPG FFPFPPSRGS NSPSDSDDQL PNWCDSPPPL  180
ISSPPCGGGG GPPTCNYNGN VATTTVTALS EDNERLRRSN TMLMSELNHM RKLYNDIIYF  240
VQNHVKPVAP SNSYPTSLLV CNPSPAAALN PNSSAAIHKP FNQVLGYYSG NPKQTQPMNH  300
VNVMMNNSNV SSPSTTTSKS NSSLTILDDP PSNNISNSGC KTKLFGVPLL HSKKRLHPEY  360
NNGSNQTVME ASKARLILEK DHDLGLHLMP PSKC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	1e-100	HSF family protein