PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G00594
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 242aa    MW: 27211.8 Da    PI: 8.6675
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G00594genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.5e-08142182954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Ro02_G00594 142 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 182
                  699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MDINQLKSEE QMEMMMMMQM DKISELCGAY NDVVSDLPSS EQYFSGSATS MPHYSHDQNP  60
HNICSPPPSF LNLSPSTISF TNSLEQSPHP QLPSEKRASM AAMREMIFRI ASMQPIHIDP  120
DSVKPPKRRN VKISKDPQSV AARHRRERIS ERIRILQRLV PGGTKMDTAS MLDEAIHYVK  180
FLKSQVQTLE RAAANNNRVP QTGIGFPVAM SSGSNYLSNS MAKAYQAYPQ QQHQNSQHFG  240
DG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.14e-43bHLH family protein