PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G00643

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 260aa MW: 28730.8 Da PI: 7.7663

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G00643	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.8	5.1e-18	37	82	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v+++G+++W++I+r++ gR++k+c++rw + Ro02_G00643 37 KGPWSAEEDRVLTRLVERYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 82 79***************************9.*********985 PP
2	Myb_DNA-binding	54.5	2.7e-17	91	133	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ Ro02_G00643 91 PFSQAEDETILAAHARYGNR-WATIARLLP-GRTDNAVKNHWNST 133 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence
MDANIAMNMC SSSTSTSDSS SSESSQPSNP NKAERIKGPW SAEEDRVLTR LVERYGPRNW 60 SLISRYIKGR SGKSCRLRWC NQLSPSVQHR PFSQAEDETI LAAHARYGNR WATIARLLPG 120 RTDNAVKNHW NSTLKRRVRE PQDHKQMDDH HGGNVEGNIG NAAIEVMMMG NSNTTSASAP 180 SPSLVGNGSM DLDDPLTELT LATPGIGGSV VSSEHHPHHH RSSSSSESFP AGFWDVMRGV 240 IAREVRDYSV VEDNHRTKEI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	3e-59	MYB family protein