PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G00697
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 248aa    MW: 26863.8 Da    PI: 4.8552
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G00697genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.5e-1958108155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr +  +g+Wv+eIr+p++   + r++lg++ t+e+Aa+a++ a+++++g
  Ro02_G00697  58 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTYPTPEMAARAHDVAALSIKG 108
                  68*****998.**********843...6***********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MSCSETPVGS EETESSSSNS SSSPPSSPGS LRNKPPSSPE LEPINKKIKR VRDSSKHPVY  60
RGVRMRNWGK WVSEIREPRK KSRIWLGTYP TPEMAARAHD VAALSIKGNS AILNFPELSD  120
SLPRPVSLAP RDVQAAASKA AQMHQFDSKT SMSATSSSSS LSSLVSAIDN LSTESEELSE  180
IVALPSLGTS YESYELTSEF VLVDSADDEW VYPPPWLQHM GDCNVYVCGD LGTSANSTVG  240
FEDSAFIN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-71ERF family protein