PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G01417
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 507aa    MW: 55537.9 Da    PI: 5.2047
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G01417genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS338.41.3e-1031194981374
         GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar.svselykalppsetsekn...sseelaalklfsevsPil 91 
                  lv+lL+++Aea++  +++  la+ +L rl+el+sp++ ++m+RlaayfteAL+  l +  + + +k l  + +++++     +++aa++l++++sP++
  Ro02_G01417 119 LVHLLMAAAEALTGANKSrdLARVILVRLKELVSPTDgTNMERLAAYFTEALQGLLEGaGGVNNSKHLIGNGSHRYQghhPMDVIAAFQLLQDMSPYV 216
                  68**********997776669***********9987769*****************995444555555444555455566999*************** PP

         GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                  kf+h+taNqaIleav++++rvHi+D+di++G+QW++L+qaL ++++gpp  +lRiT++++   g  s  +++etg+rL+ fA+++g pf+f+    ++
  Ro02_G01417 217 KFGHFTANQAILEAVAHDRRVHIVDYDIMEGIQWASLMQALVAKKDGPPtpHLRITALSRGGCGrrSIGTVQETGRRLTAFATSIGQPFSFHQCRLDS 314
                  ******************************************999766555*********666688999************************9999* PP

         GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseer 282
                   e++++++L++ +gEal++n++l+l ++  +s ++ s   ++L+  k+l+P++v++ve+e+   +++ F++rf+++l++ysa++dslea++p +s++r
  Ro02_G01417 315 DETFRPSALKLVKGEALVINCMLNLPHFSYRSPDSIS---SFLSGAKTLNPRLVTLVEEEVRPaGDGGFVARFMDSLYHYSAVYDSLEAGFPMQSRAR 409
                  ****************************977777777...9********************999********************************** PP

         GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                  + vEr++lg++i   ++   ++     e   +W e+l+++GFkp+p+s  + +qaklll  ++ dgyrvee  ++ lvlgWk+r L+s+S W+
  Ro02_G01417 410 ALVERVFLGPRIAGSLSRIYRA---HGEVGCSWWEWLGAVGFKPMPVSFANHCQAKLLLGLFN-DGYRVEEVaNHRLVLGWKSRCLLSASIWT 498
                  *******************999...677788********************************.******86488899**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    
MTELLMLSSA MELELDLSGC STETISTTNT AISADQWYDW SPVVDWEALD PTDQLAGGGD  60
FHELIESMME DGGEMDSPSP PIEEASNSCY TTTSSQSTDV MMLEEGAASN GEDSKGLRLV  120
HLLMAAAEAL TGANKSRDLA RVILVRLKEL VSPTDGTNME RLAAYFTEAL QGLLEGAGGV  180
NNSKHLIGNG SHRYQGHHPM DVIAAFQLLQ DMSPYVKFGH FTANQAILEA VAHDRRVHIV  240
DYDIMEGIQW ASLMQALVAK KDGPPTPHLR ITALSRGGCG RRSIGTVQET GRRLTAFATS  300
IGQPFSFHQC RLDSDETFRP SALKLVKGEA LVINCMLNLP HFSYRSPDSI SSFLSGAKTL  360
NPRLVTLVEE EVRPAGDGGF VARFMDSLYH YSAVYDSLEA GFPMQSRARA LVERVFLGPR  420
IAGSLSRIYR AHGEVGCSWW EWLGAVGFKP MPVSFANHCQ AKLLLGLFND GYRVEEVANH  480
RLVLGWKSRC LLSASIWTSP PESDFVN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-168GRAS family protein