PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G01470

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Protein Properties

Length: 386aa MW: 43787.1 Da PI: 8.9276

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G01470	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.2	5.5e-17	149	234	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffk+l + ++++ l++p f++++ + + l+ +sg+ W v l +k+++r +++kGW+ Fvk + L++gDf++F++dg s f v++ Ro02_G01470 149 FFKAL--MYDFSQD-LRIPSAFTKNFRRS---LRICGLQGPSGQCWAVDL--EKRGNRLFFQKGWECFVKHHSLQVGDFLTFSYDGVSMF--DVTI 234 78888..7888887.******777433...3467899*******..******************************998877..5555 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MQTANWFGEW QRTSIIAGQE GNFTFWVYDF KGFSLALPGL LDFVNGLLVY CVLVLTSFLA 60 FVFLVIAFLL FYLDLIICFR IGSAFLVLLQ ASRLGLSLIN FLHQLVIFLF NYSIENILLF 120 CLNSTFVKFG LEQLQMARKM QHSAERPAFF KALMYDFSQD LRIPSAFTKN FRRSLRICGL 180 QGPSGQCWAV DLEKRGNRLF FQKGWECFVK HHSLQVGDFL TFSYDGVSMF DVTIYGKTCC 240 EKIVKPAKRR SESNANADKR RVHFNLPAVD HVEETSLGSI IPFQSENSYV AKTLKKDTLY 300 ELYITKEVAT TEGLRPGMTV KVKDTFGMSW SLKLCGSAAD DRVLMRSGLA DICKASIASP 360 GDTLIFEFVK PRVVQLHVIK AAGAYY

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MQTANWFGEW QRTSIIAGQE GNFTFWVYDF KGFSLALPGL LDFVNGLLVY CVLVLTSFLA  60
FVFLVIAFLL FYLDLIICFR IGSAFLVLLQ ASRLGLSLIN FLHQLVIFLF NYSIENILLF  120
CLNSTFVKFG LEQLQMARKM QHSAERPAFF KALMYDFSQD LRIPSAFTKN FRRSLRICGL  180
QGPSGQCWAV DLEKRGNRLF FQKGWECFVK HHSLQVGDFL TFSYDGVSMF DVTIYGKTCC  240
EKIVKPAKRR SESNANADKR RVHFNLPAVD HVEETSLGSI IPFQSENSYV AKTLKKDTLY  300
ELYITKEVAT TEGLRPGMTV KVKDTFGMSW SLKLCGSAAD DRVLMRSGLA DICKASIASP  360
GDTLIFEFVK PRVVQLHVIK AAGAYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24700.1	5e-18	B3 family protein