PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G01596
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 229aa    MW: 25688.5 Da    PI: 5.6946
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G01596genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.8e-17554154
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                 ++++GVr++  +g+Wv+eIr+p        +r++lg+f tae Aa+a+++a   ++
  Ro02_G01596  5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQASILMN 54
                 59*****999.**********8.....334********************976665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MVQSKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAS ILMNGQNAKT  60
NFPNSFSNNN PSDDQETKPT DPHHQQTPWN PKELAELLSS KLKKCCKDPS PSLTCLRLDN  120
DNSHIGVWQK RPAGSRASSN WVMRIELGKK KKQCNTTDIE SEEAISTSLS SLISSSTAGS  180
IDNEAGIVSE EADDDHEEED KLAMQMIEEL LNWNSYPIPS STSNVQEGN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.27e-55ERF family protein