PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G01609
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 243aa    MW: 27682.7 Da    PI: 8.9363
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G01609genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3421.7e-13144242298
                  EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                  + v ++s++ ++  l +  +f++++  +g    ++ + l+ ++g +W+ k+++  ++k ++  + +GW +F+ +n L++gD +v++l+++  + +++v
  Ro02_G01609 144 LAVKLQSSYIANP-LKIQYTFVNQYifQGY--LTRSVNLQIPNGGTWSAKCTVsvCRKYNHARIHGGWTKFAWDNCLQAGDAIVLELIEQqPKVTFNV 238
                  5566678888876.999*****99988444..4557***************877788888899*************************8889999*** PP

                  EEE- CS
           B3  95 kvfr 98 
                  ++fr
  Ro02_G01609 239 HIFR 242
                  **98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MASSSSKRAA SPVKTPSFFK VVLDESLQDG RLEIEGYVAV KFKNCVADKL LLKVPNGEVL  60
PVDLTRDDDI YSLWLEKGWL EFANFYSLEN GCFLFFSYEG LHSCFKVRIF NKNGLEVDYQ  120
FKSSRAYGEA FSRASRFQSN SPFLAVKLQS SYIANPLKIQ YTFVNQYIFQ GYLTRSVNLQ  180
IPNGGTWSAK CTVSVCRKYN HARIHGGWTK FAWDNCLQAG DAIVLELIEQ QPKVTFNVHI  240
FRA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.12e-15B3 family protein