PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G02254

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

E2F/DP

Protein Properties

Length: 757aa MW: 84186.9 Da PI: 7.7549

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G02254	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	75.9	4.1e-24	580	644	1	70
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwk 70 r+++sL+llt+kf++ll+ +++++++ln++ak L +v ++RRiYDi+NVLe++nl+ k +kn++rwk Ro02_G02254 580 RYDSSLGLLTKKFVSLLQGTNDRTLDLNKAAKLL---EV--QKRRIYDITNVLEGINLLVKVSKNHVRWK 644 6899****************************...99..**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 757 aa Download sequence
MSENKLHGDA VENPRLTWDG CSVLLDINDG DRLVFSRLSA GAKLKIGNKN CSLQPLIGCP 60 FGSFFRVENG SEGPYLSRYT PSTEGNNIQE QGDCQSKDEL RDNRALVDNN KAQSLTGDAI 120 NEMRRQGATG DEIVEALIAN STTFEKKTVF SQEKYRLKKQ KKYAPIVLLR RPFTRRFLRM 180 DTLCLLLSMA NVSANSDVLV VDMVGGLLTG AVAERLGGTG YVCNTYAGGS PYPMDIARIF 240 NFGNEICKRI VRSPLTDLFS VQTGMRNPAS HNGDSCSMEC ESNDQISSDV GTEEVSPTSE 300 KVISDLIPES TNSQEVKICK SAKLGEKASQ EIISLWKENG FSSLVIAAPE LDTWSLVKEI 360 LPLLSNSAPF AIYHQYLQPL ATCMHNLQVG KMAVGLQISE PWLREYQVLP SRTHPCMQMN 420 GFGGYILSGT KIYMEDPSRL PRPSQFQYHL LHSHSQIQSS AVPSNQRLLR QFTPPSDEDS 480 KPLNLSDKPL SSRADAYAAF SKLELGKVKE ETDNCEAQIS GQATASDQKK VLNDSFPTIP 540 KSWRGVQKIS KSKVAKLIKS ETVGSNAESQ DGVTPVTACR YDSSLGLLTK KFVSLLQGTN 600 DRTLDLNKAA KLLEVQKRRI YDITNVLEGI NLLVKVSKNH VRWKERRELL RTVKEDRNNK 660 TYLFLTEKDI LSLPCFQNQT LIAIKAPHAS TIEVLDPDED IDFPQRQYRM TVRSATGQID 720 LYLLRPMMTI GLDQNLKSAL QISGNPDDMK DSVLFVV

Sequence ? help Back to Top

Protein Sequence Length: 757 aa Download sequence

MSENKLHGDA VENPRLTWDG CSVLLDINDG DRLVFSRLSA GAKLKIGNKN CSLQPLIGCP  60
FGSFFRVENG SEGPYLSRYT PSTEGNNIQE QGDCQSKDEL RDNRALVDNN KAQSLTGDAI  120
NEMRRQGATG DEIVEALIAN STTFEKKTVF SQEKYRLKKQ KKYAPIVLLR RPFTRRFLRM  180
DTLCLLLSMA NVSANSDVLV VDMVGGLLTG AVAERLGGTG YVCNTYAGGS PYPMDIARIF  240
NFGNEICKRI VRSPLTDLFS VQTGMRNPAS HNGDSCSMEC ESNDQISSDV GTEEVSPTSE  300
KVISDLIPES TNSQEVKICK SAKLGEKASQ EIISLWKENG FSSLVIAAPE LDTWSLVKEI  360
LPLLSNSAPF AIYHQYLQPL ATCMHNLQVG KMAVGLQISE PWLREYQVLP SRTHPCMQMN  420
GFGGYILSGT KIYMEDPSRL PRPSQFQYHL LHSHSQIQSS AVPSNQRLLR QFTPPSDEDS  480
KPLNLSDKPL SSRADAYAAF SKLELGKVKE ETDNCEAQIS GQATASDQKK VLNDSFPTIP  540
KSWRGVQKIS KSKVAKLIKS ETVGSNAESQ DGVTPVTACR YDSSLGLLTK KFVSLLQGTN  600
DRTLDLNKAA KLLEVQKRRI YDITNVLEGI NLLVKVSKNH VRWKERRELL RTVKEDRNNK  660
TYLFLTEKDI LSLPCFQNQT LIAIKAPHAS TIEVLDPDED IDFPQRQYRM TVRSATGQID  720
LYLLRPMMTI GLDQNLKSAL QISGNPDDMK DSVLFVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36010.1	3e-54	E2F/DP family protein