PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G02299

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

SRS

Protein Properties

Length: 333aa MW: 35968.4 Da PI: 7.5616

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G02299	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	224.8	1.7e-69	112	260	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelks.kkqsalsstklssaeskke 99 s +++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerq+q +a+++++ ++++ + +kr+r+++ + s+l++ +l++++s Ro02_G02299 112 SSGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQEQFSALQQQQ-QQQQLQFPKRPRDNQGgAGGSSLACVRLPTNTS--G 206 5679**********************************************999987766.556778889999885415667888899888875..5 PP DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 le +s+P+evss+avfrcvrvs++dd ee++aYqtav+igGhvfkG+LydqGl+ Ro02_G02299 207 LELASFPAEVSSPAVFRCVRVSAMDDVEEQFAYQTAVNIGGHVFKGLLYDQGLD 260 8999**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence
MAGFFGSLGG RDQGLRNKQD GGDHERGGGN LNLFSYGNEE IYNNKGGFEL WPQYHPPPHP 60 HQQSLNYYAF GVDPSHRNNN NNLEGNVSDD SSSGLRLTVM RQGGGGGSGL GSSGMNCQDC 120 GNQAKKDCPH LRCRTCCKSR GFQCQTHVKS TWVPAAKRRE RQEQFSALQQ QQQQQQLQFP 180 KRPRDNQGGA GGSSLACVRL PTNTSGLELA SFPAEVSSPA VFRCVRVSAM DDVEEQFAYQ 240 TAVNIGGHVF KGLLYDQGLD GHYTSATTAG ESSSGHQDGG GHHHNQQQLN LITTNTSTSA 300 NPPTATLLDP SVVFPTPLNA FVAGTQYFPP PRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19790.1	2e-75	SRS family protein