PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G02317

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TALE

Protein Properties

Length: 1038aa MW: 115750 Da PI: 6.1241

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G02317	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.1	1.4e-08	424	456	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp+ +e+ LA+++gLt +qV +WF N R + Ro02_G02317 424 LPYPKDSEKVMLARQTGLTRNQVANWFINARVR 456 69*****************************88 PP
2	Homeobox	28.1	3.5e-09	961	998	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gL+++qV++WF N R + Ro02_G02317 961 FEHflHPYPNDSEKLMLASQTGLSKNQVSNWFINARVR 998 554459******************************88 PP
3	BELL	114.4	5.8e-37	282	353	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erq+lq+kk+kLls+l+eVd+rYkqy++q+q v+s F+ +ag g+a pYt+lAl+aiSrhFr+L dai++q+ Ro02_G02317 282 ERQDLQNKKTKLLSMLDEVDRRYKQYYHQMQNVVSFFDKAAGNGAAGPYTALALQAISRHFRSLHDAIKGQV 353 799******************************************************************997 PP
4	BELL	100.5	1.3e-32	823	893	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 ++e q+k+a L++lleeV++r ++y++q++ v+ssFe+v+g g+ak+Yt+lAlka+SrhF +L+dai+++i Ro02_G02317 823 KHEFQAKIANLITLLEEVEDRCEKYYHQMEEVMSSFEMVVGAGAAKSYTALALKAMSRHFGSLRDAIVSHI 893 789*****************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1038 aa Download sequence
MIRRLGGTQT MATYFQNLSN QNLLTPYPGD EKLASYPEQP SNMMMYLNQA SYPGSYSEVL 60 SGGSFSPHKC AESDGGRNEM MFIPPTSGPV RDGVTGDSLI GSLDGKHGIQ DHGLSLSLAT 120 QIPSAVSVPS FEYQYLNPSL PSVLSTSQIL GKGEFHCKGD EYSQNEEFRN FESLTSGLYD 180 SLKTQNFSSP MGSMVPKEMH SEAYLYDSLG FSNSMLNTKY LKAAQQLLDE VVNVRKALKQ 240 SRSNKHQRPN GSDGSKETDG IRMSSDPSES SNISSVELSP AERQDLQNKK TKLLSMLDEV 300 DRRYKQYYHQ MQNVVSFFDK AAGNGAAGPY TALALQAISR HFRSLHDAIK GQVQVAQRSL 360 GEKDTPSDAQ GEVIPRLRYV DQQLRQQRAF QQHGIMQHSW RPQRGLPESS VAILRAWLFE 420 HFLLPYPKDS EKVMLARQTG LTRNQVANWF INARVRLWKP MIEEMYKEEF GDLEMDSKSS 480 PENVLKEARV DFSASEDRRD ELQESLMSAT ADSVEPGQVH DSKSGITKLQ DDGQRPNADD 540 RSLYLDANQN GVATYDMSGL GNAVGSEVSL ALELRHSEEH DGFPAPNGSE VRVNDPEASL 600 DCYYGDPGQQ QYSLQILVTM VSQDSPPNPA SSILHQFIVS NSMAGQNHME NQHQLDAAYG 660 SNFRTSTHTF PQSLPSIHSL EERISRSMDL VHAPQTEESD HVSHTRHLMD HHQAQRLSLS 720 LGSHMLLPSN SHSVQYVSDD YSFMGNALAS SSNSLAAIIG NSRYLKPAQS LLEEIVSVGG 780 KSVDISNEKH VGKLYGGGRR GSMGLSSELK AELCCNGLIS PDKHEFQAKI ANLITLLEEV 840 EDRCEKYYHQ MEEVMSSFEM VVGAGAAKSY TALALKAMSR HFGSLRDAIV SHIYAEKRKL 900 MQDVPKVSSG LAQLSLFDRE CRQKRMSLQQ LGILHSQRQA AWRPIRGLPE TSVAILRTWL 960 FEHFLHPYPN DSEKLMLASQ TGLSKNQVSN WFINARVRLW KPMIEEMYKE EFGDSSQDSN 1020 PLANSSMTGE SNTDHTED

Sequence ? help Back to Top

Protein Sequence Length: 1038 aa Download sequence

MIRRLGGTQT MATYFQNLSN QNLLTPYPGD EKLASYPEQP SNMMMYLNQA SYPGSYSEVL  60
SGGSFSPHKC AESDGGRNEM MFIPPTSGPV RDGVTGDSLI GSLDGKHGIQ DHGLSLSLAT  120
QIPSAVSVPS FEYQYLNPSL PSVLSTSQIL GKGEFHCKGD EYSQNEEFRN FESLTSGLYD  180
SLKTQNFSSP MGSMVPKEMH SEAYLYDSLG FSNSMLNTKY LKAAQQLLDE VVNVRKALKQ  240
SRSNKHQRPN GSDGSKETDG IRMSSDPSES SNISSVELSP AERQDLQNKK TKLLSMLDEV  300
DRRYKQYYHQ MQNVVSFFDK AAGNGAAGPY TALALQAISR HFRSLHDAIK GQVQVAQRSL  360
GEKDTPSDAQ GEVIPRLRYV DQQLRQQRAF QQHGIMQHSW RPQRGLPESS VAILRAWLFE  420
HFLLPYPKDS EKVMLARQTG LTRNQVANWF INARVRLWKP MIEEMYKEEF GDLEMDSKSS  480
PENVLKEARV DFSASEDRRD ELQESLMSAT ADSVEPGQVH DSKSGITKLQ DDGQRPNADD  540
RSLYLDANQN GVATYDMSGL GNAVGSEVSL ALELRHSEEH DGFPAPNGSE VRVNDPEASL  600
DCYYGDPGQQ QYSLQILVTM VSQDSPPNPA SSILHQFIVS NSMAGQNHME NQHQLDAAYG  660
SNFRTSTHTF PQSLPSIHSL EERISRSMDL VHAPQTEESD HVSHTRHLMD HHQAQRLSLS  720
LGSHMLLPSN SHSVQYVSDD YSFMGNALAS SSNSLAAIIG NSRYLKPAQS LLEEIVSVGG  780
KSVDISNEKH VGKLYGGGRR GSMGLSSELK AELCCNGLIS PDKHEFQAKI ANLITLLEEV  840
EDRCEKYYHQ MEEVMSSFEM VVGAGAAKSY TALALKAMSR HFGSLRDAIV SHIYAEKRKL  900
MQDVPKVSSG LAQLSLFDRE CRQKRMSLQQ LGILHSQRQA AWRPIRGLPE TSVAILRTWL  960
FEHFLHPYPN DSEKLMLASQ TGLSKNQVSN WFINARVRLW KPMIEEMYKE EFGDSSQDSN  1020
PLANSSMTGE SNTDHTED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75410.2	1e-105	TALE family protein