PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G02356
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 154aa    MW: 17300.6 Da    PI: 9.1685
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G02356genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.85.8e-091558344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   +l+ +a + + ++   +W+ +a+ +g g++++++k ++
      Ro02_G02356 15 SWTPKQNKLFEKALAVYDKDtqdRWHNVAKAVG-GKSAEEVKRHY 58
                     7********************************.**********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    
MASLTSSRNS NSNSSWTPKQ NKLFEKALAV YDKDTQDRWH NVAKAVGGKS AEEVKRHYEI  60
LVQDLMYIES GQVAIPNYRA TASNPRGIAD YEQSTSNKSH SLPCLFKTRA VQAYEKSEDL  120
MGWTDQKKCR KTALLLCYAA KLLVASTKCE CVKD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-38MYB_related family protein