PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G02467
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 202aa    MW: 23380.4 Da    PI: 9.6444
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G02467genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.64e-17895194
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94
                 ffkvl   d ++++ l +p  f+++++g +++  + +l+ ++g  W+v+l  + + ++ ++++GW++Fvk   L+egDf+v+++++  s+f ++v
  Ro02_G02467  8 FFKVL--IDDFSQH-LKMPIAFVDNFKGTPPC--KCVLTGPNGTNWNVEL--EENENGLFFRNGWQNFVKGYCLEEGDFLVLYYNDLmSQFMMKV 95
                 89999..999*999.999*****999999988..7***************..********************************98878886666 PP
2B330.85.1e-101121911498
                  T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   ++++pkk +++ g+   ++k ++l+d++ r   v+      +gr  ltkGW++ +++n++  gD +vF++++       +++fr
  Ro02_G02467 112 EQVTIPKKIVKAEGLM--GHKSVKLQDPDKRLQIVNT-LVSFDGRLKLTKGWRQCCNENKISFGDKLVFEFVK--PNVIQFHIFR 191
                  5689******999777..6678******998777777.355567799***********************876..3434677776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    
MALSKPAFFK VLIDDFSQHL KMPIAFVDNF KGTPPCKCVL TGPNGTNWNV ELEENENGLF  60
FRNGWQNFVK GYCLEEGDFL VLYYNDLMSQ FMMKVPVRWI QKYQRGQVPL MEQVTIPKKI  120
VKAEGLMGHK SVKLQDPDKR LQIVNTLVSF DGRLKLTKGW RQCCNENKIS FGDKLVFEFV  180
KPNVIQFHIF RGKDVLLQGP KI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.12e-12B3 family protein