PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G02515
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family CO-like
Protein Properties Length: 339aa    MW: 37667.3 Da    PI: 5.8899
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G02515genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.85.1e-09436436
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                 + C+ +++  ++lfC+ ++ +lC +C +++H  
  Ro02_G02515  4 KLCDSCKSATATLFCRADSAFLCINCDTKIHAA 36
                 68*****************************55 PP
2zf-B_box28.82.6e-094691342
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                  + C+ +e+ +++  C+ ++  lC +C  e+H+       H++vp+
  Ro02_G02515 46 VWLCEVCEQAPAHVTCKADDATLCVTCDREIHSAnplsrrHERVPV 91
                 679*****************************66899999*99986 PP
3CCT69.96.5e-24278321144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Ro02_G02515 278 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 321
                  9*****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MASKLCDSCK SATATLFCRA DSAFLCINCD TKIHAANKLA SRHARVWLCE VCEQAPAHVT  60
CKADDATLCV TCDREIHSAN PLSRRHERVP VAPFYDSLNS DNSIPVKSGA AVNFLDDRYF  120
SDVDGETTEV SREEAEAASW LLPNPKAMDS PDLNSGQYVF SDMDPYLDLD YGAVDPKIEV  180
QEQNSCGTDG VVPVQSKSVQ PQIVNEHCFE MDLPGSKPFI YGFNGHCLSQ SVSSSSLDVS  240
VVPDGNMLTD VSDPYPKSIG SMVDQLSHPT VQISSADREA RVLRYREKRK NRKFEKTIRY  300
ASRKAYAETR PRIKGRFAKR TEVEIEAERL CRYGVVPSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-141CO-like family protein