PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G03951
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family LBD
Protein Properties Length: 214aa    MW: 23459.5 Da    PI: 7.6589
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G03951genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.46.6e-40181191101
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p ++r +a+ ++ yeA+ar+rdPvyG+v++i++lqqq+++l+a+l ++
  Ro02_G03951  18 PCGACKFLRRKCASDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTISYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQV 115
                  7*************************99********************************************************************99 PP

       DUF260  98 keel 101
                  k++l
  Ro02_G03951 116 KAQL 119
                  9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MASGSTGSSA SATGTGSPCG ACKFLRRKCA SDCIFAPYFC SEQGPARFAA IHKVFGASNV  60
SKLLLHVPVH DRCEAVVTIS YEAQARIRDP VYGCVAHIFA LQQQVACLQA QLMQVKAQLA  120
HQNLMDSRNM ENQWQGNVNG VTNFPSYSSY MNPISPQSSL DSIDHSSSDA MNYMQETQNC  180
SREEFSFQGC SMKRAYNSTD LGELQALALR MMRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.13e-59LBD family protein