PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G03955
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C2H2
Protein Properties Length: 217aa    MW: 24263.2 Da    PI: 5.622
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G03955genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000253557123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C  C++ F++   L  H++ H
  Ro02_G03955 35 YECVFCKRGFTTAQALGGHMNIH 57
                 99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MESQSNHRHE DEDSKSSSDE EAEDVNHDLG TGRSYECVFC KRGFTTAQAL GGHMNIHRKE  60
RAKPRPTSAP TSIASNKSTD ETVSLMRSYR SLQSYTGPHF AAAPEVDVNY RTYIPAPTWF  120
VGSDHSSDHE DFCARNYPVQ HHQNLFATGD DGRNWRSGSG LSLGIGPSAH DDDDNHVGHD  180
HHKKEIEGIN GGCNSERDEL DLELRLGHDP YEVKYLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.11e-12C2H2 family protein