PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G03956
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C2H2
Protein Properties Length: 226aa    MW: 25658.9 Da    PI: 9.5128
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G03956genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.8e-052648123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C++ F++   L  H+++H
  Ro02_G03956 26 FTCSFCKREFKSAQALGGHMNVH 48
                 89*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MMDCVKLRFG REEDLSDISS WSSKNFTCSF CKREFKSAQA LGGHMNVHRR DRARLRLLPP  60
NLILSSSSSE YSPYHNPKPN PNPKSYFSSS SLPSSSSSLS SANKYLPQLL SPSRSTYVST  120
PSSGTSDHKN KKLMIFDSGS HQHHVPAFLN PKKGIMRGSA LDYEAGDQLN GFSWFSPKHH  180
LDDDFKALKK DEKHINMIRV DLDMELRIKD PNYKEEVDLE LRLGHL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.13e-12C2H2 family protein