PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G03970

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 525aa MW: 58460 Da PI: 6.1143

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G03970	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.6	4.6e-13	358	404	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI++Lq Ro02_G03970 358 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYINDLQ 404 799*********************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence
MGEKLWVNEE EKVIVESVLG TEACQFLISL TSENLLSDLA RPPGQLGVQQ GLSQLVQGSN 60 WNYAIFWQVV GLKSGGAALI WGDGHCRDTK GGGLGDESSS RDSNLEGVQK KNEEVKKWVL 120 ERLHSCFGGS HEDNYARRLD GLSDVEMFYL TSMYYKFLLD SPYAPYGPGE SYKCVKSIWV 180 SNVATCLHHY QSRSFLARLA GFQTLVFVPT KSGVVELGSV KSILEEQNVV DMARSVFGES 240 SSAQAKVYPK IFGRELSLGG PKSQPINIAF CPKVETDSSF PSESFDLQAI GTPNGCRSED 300 NEVKLFPHLS QIMAGNFSST TGVSSSELPK DESSAQIDER KPRKRGRKPA NGREEPLNHV 360 EAERQRREKL NQRFYALRAV VPNISKMDKA SLLGDAITYI NDLQTKIRVM ETEKLMGNNS 420 HMQFPVPEID FQERHDDAVV GMNCPLDSHP VSDVIRTLRE HNIVAQDTNV SITDDNTVIH 480 TFSIPTQGGD AEQLKEKLFY SSAWLVIQIL TQKQLNRTNV RTLLC

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence

MGEKLWVNEE EKVIVESVLG TEACQFLISL TSENLLSDLA RPPGQLGVQQ GLSQLVQGSN  60
WNYAIFWQVV GLKSGGAALI WGDGHCRDTK GGGLGDESSS RDSNLEGVQK KNEEVKKWVL  120
ERLHSCFGGS HEDNYARRLD GLSDVEMFYL TSMYYKFLLD SPYAPYGPGE SYKCVKSIWV  180
SNVATCLHHY QSRSFLARLA GFQTLVFVPT KSGVVELGSV KSILEEQNVV DMARSVFGES  240
SSAQAKVYPK IFGRELSLGG PKSQPINIAF CPKVETDSSF PSESFDLQAI GTPNGCRSED  300
NEVKLFPHLS QIMAGNFSST TGVSSSELPK DESSAQIDER KPRKRGRKPA NGREEPLNHV  360
EAERQRREKL NQRFYALRAV VPNISKMDKA SLLGDAITYI NDLQTKIRVM ETEKLMGNNS  420
HMQFPVPEID FQERHDDAVV GMNCPLDSHP VSDVIRTLRE HNIVAQDTNV SITDDNTVIH  480
TFSIPTQGGD AEQLKEKLFY SSAWLVIQIL TQKQLNRTNV RTLLC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	340	348	RKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16430.1	1e-164	bHLH family protein