PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G03985
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 207aa    MW: 22686.1 Da    PI: 10.8437
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G03985genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.4e-2065114255
          AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +++GVr ++ +gr++AeIrd +     + +r +lg+f+taeeAa+a++ a+++l+g
  Ro02_G03985  65 HFRGVRKRP-WGRYAAEIRDpW-----TkTRKWLGTFDTAEEAARAYDDAARSLRG 114
                  69*******.**********88.....44*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    
MAVDAMHASL SLTVSPPAAD TASPPPKGHP KTSRGALRSA HVRGSMKKAA QVSEAGGGGR  60
LKEAHFRGVR KRPWGRYAAE IRDPWTKTRK WLGTFDTAEE AARAYDDAAR SLRGFKAKTN  120
FGNPPPTPLP PQPLHAVMIR GSEVFWTAPP AYFNDMVPAP APVRSEYKGY KLENLGVVVT  180
AQEKKMRKAE SEKRPFLFDL NLPAPLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-23ERF family protein