PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G04005
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 295aa    MW: 31431.5 Da    PI: 6.6391
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G04005genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.2e-09144188554
                  HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  h+++Er RR+ri +++  L+el+P+ +      K + a++L + ++Y+k L
  Ro02_G04005 144 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIMDYVKFL 188
                  99***********************55......****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MANNPSEAQA DDFLEQILRL PNFASSDANL TGSDGGLAGA PSAMMLQLSS GDGSGHLGAV  60
GGGGFHGGFP LGLSLEQGKA GFLKTEEASG SGKRFRDDVV DSRNPSVKNV FHGQPISSTV  120
AAAPHPPTMR PRVRARRGQA TDPHSIAERL RRERIAERIR ALQELVPSVN KTDRAAMLDE  180
IMDYVKFLRL QVKVLSMSRL GGAGAVAPLV TDIPLSSVEE EGGEGGRNQP AWDKWSNDGT  240
ERQVAKLMEE NVGAAMQFLQ SKALCIMPIS LASAIYHTQP PDTSSVVKHE MNPPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149154RLRRER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-110bHLH family protein