PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G04007

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bZIP

Protein Properties

Length: 445aa MW: 48169.9 Da PI: 6.3263

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G04007	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	54.8	2e-17	225	279	3	57
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 ++kr+rr+ +NRe+ArrsR+RK+a++ Le+ + +L +eN+aL k+l +++++ Ro02_G04007 225 DVKRARRMLSNRESARRSRRRKQAQMTDLETQAGQLRGENSALLKQLTDVNQKYD 279 78******************************************98888777765 PP

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence
MHSAFPADEI SDISDTFWAS SPSLPMNRSA SEWAFEQFLE EVVSAPPAAT LANADELTVS 60 SVASAHSSTS KREEADEEVV EIKKPDCHQQ PQHLNCPLPP PPSTAPIDSD QYRELLKSKL 120 DLACAAVALT RASSLKPVDS GNVAQTQSLL PQPSQLTSGL HKAGGSGLAQ NEGDTSPLGI 180 PALPALQRKS VVQSKQTTSG SSKDDSDDDD LEGDIEITEN MDPADVKRAR RMLSNRESAR 240 RSRRRKQAQM TDLETQAGQL RGENSALLKQ LTDVNQKYDN SVVDRRILEA NIETLRAKVK 300 MAEESVKRKT GINPLLLAMS NVVPRASMAS LSNPMDTSAN ASVPMQPTSN HLFHPVVPSI 360 NTPPHHQRLD TSFPGNPSIP LVGNQQSTVG QPIVRGSNMT EVSSVQHTAS IDHIQQQQLR 420 PGVNPCEALP GWNPHIPHTV PKNKK

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence

MHSAFPADEI SDISDTFWAS SPSLPMNRSA SEWAFEQFLE EVVSAPPAAT LANADELTVS  60
SVASAHSSTS KREEADEEVV EIKKPDCHQQ PQHLNCPLPP PPSTAPIDSD QYRELLKSKL  120
DLACAAVALT RASSLKPVDS GNVAQTQSLL PQPSQLTSGL HKAGGSGLAQ NEGDTSPLGI  180
PALPALQRKS VVQSKQTTSG SSKDDSDDDD LEGDIEITEN MDPADVKRAR RMLSNRESAR  240
RSRRRKQAQM TDLETQAGQL RGENSALLKQ LTDVNQKYDN SVVDRRILEA NIETLRAKVK  300
MAEESVKRKT GINPLLLAMS NVVPRASMAS LSNPMDTSAN ASVPMQPTSN HLFHPVVPSI  360
NTPPHHQRLD TSFPGNPSIP LVGNQQSTVG QPIVRGSNMT EVSSVQHTAS IDHIQQQQLR  420
PGVNPCEALP GWNPHIPHTV PKNKK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	240	247	RRSRRRKQ
2	242	247	SRRRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	1e-45	bZIP family protein