PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G04036

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 314aa MW: 35346.6 Da PI: 8.6673

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G04036	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.7	1.9e-23	59	146	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y+ ++GF+vrk++ kk+ +g +t+++++Cskeg+r+++k++ ++++ +++ tr+gCka+++ ++k+g+++v ++++ HnH+l Ro02_G04036 59 RFYVNYGGKLGFNVRKKHRKKN-SDGFVTRYRYCCSKEGYRANNKRS-SNASYSQPITRCGCKAHMTCLLQKNGNFRVVSFQESHNHALI 146 5*************998887.9999*************999.99999********************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence
METTNCISLS TGTSSDSEDL QGEDQCDFTA LVPPNDVHEE KTEEVILGKE FMDVESAYRF 60 YVNYGGKLGF NVRKKHRKKN SDGFVTRYRY CCSKEGYRAN NKRSSNASYS QPITRCGCKA 120 HMTCLLQKNG NFRVVSFQES HNHALIRTPM KHIHLCRTFR DIASIAADDE ELTEYAHQSL 180 VNMLKGLEEI KKNRGDKEGT GSSDSSKEKS VFDENEDAEG IIESNTCATT IVRGVKRKAT 240 VGRPRTRFKD PAERKKSKVH KKTTKAPTRR KIAMQESDSI GTTSESQPII GYDVQAYDVL 300 TQLTGRKGRG CELE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	243	256	RPRTRFKDPAERKK
2	245	258	RPRTRFKDPAERKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-15	FAR1 family protein