PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G04427

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 407aa MW: 45047.5 Da PI: 7.1677

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G04427	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.4	2.9e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl Ro02_G04427 14 RGPWSPEEDSKLKSYIEQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	37.7	4.7e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd l+ + G++ W+ Ia+ ++ gRt++++k++w++ Ro02_G04427 69 GGFSEEEDNLICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MGRAPCCDKA NVKRGPWSPE EDSKLKSYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNLIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 HRKEHQAAAR RSAAGLKQQE IIKRGLIISS SNSMVNPVAA DSQSPYWPEL PVLQVPTIPN 180 YSSPNQEVAV PSFNDHASIR KLLIKLGGRF HSDHQDNVVQ PNIQNVYSSN ADIQLPVDQF 240 PSSTHQIYHE ESAANMLSSA SPIAALASSP DQFAQINHYN NTDHAGDGAA LHMFQGGQSS 300 NYLLTEELKD MVYNINPEKL DGLEFLYSED IMIMMNDSSI SSTTSTNTSY GDRSTIGWGG 360 DQMQLVYPTS VAASGSDYHQ GMQRMIMPQD QCANFNGLSS YPGAGVQ

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MGRAPCCDKA NVKRGPWSPE EDSKLKSYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNLIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
HRKEHQAAAR RSAAGLKQQE IIKRGLIISS SNSMVNPVAA DSQSPYWPEL PVLQVPTIPN  180
YSSPNQEVAV PSFNDHASIR KLLIKLGGRF HSDHQDNVVQ PNIQNVYSSN ADIQLPVDQF  240
PSSTHQIYHE ESAANMLSSA SPIAALASSP DQFAQINHYN NTDHAGDGAA LHMFQGGQSS  300
NYLLTEELKD MVYNINPEKL DGLEFLYSED IMIMMNDSSI SSTTSTNTSY GDRSTIGWGG  360
DQMQLVYPTS VAASGSDYHQ GMQRMIMPQD QCANFNGLSS YPGAGVQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	6e-80	MYB family protein