PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G04430

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HD-ZIP

Protein Properties

Length: 255aa MW: 28500 Da PI: 8.1712

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G04430	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.7	2.3e-19	108	162	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Le+ F+++ +++ +++++LA kl+L rqV vWFqNrRa+ k Ro02_G04430 108 RKKLRLTKEQSATLEDSFKQHTTLNPKQKQDLAGKLNLRPRQVEVWFQNRRARTK 162 78889************************************************98 PP
2	HD-ZIP_I/II	121.3	4.8e-39	108	195	1	88
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl+keq+++LE+sF+++++L+p++K++la +L+l+prqv+vWFqnrRARtk+kq+E d+e Lk++++alke+n rL+ke +eL+ Ro02_G04430 108 RKKLRLTKEQSATLEDSFKQHTTLNPKQKQDLAGKLNLRPRQVEVWFQNRRARTKLKQTEADCELLKKCCEALKEDNIRLHKELQELK 195 69*************************************************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MGFGEIACTA ELGLSLGCHD KPADHDHDHQ NQKKAHLKYD QLLPSDLTLG PSDEGELRGS 60 NSSSPSGAVS SFSNSSSFRR MDRDLLGSGE EVERVSEKLY EDQAGSPRKK LRLTKEQSAT 120 LEDSFKQHTT LNPKQKQDLA GKLNLRPRQV EVWFQNRRAR TKLKQTEADC ELLKKCCEAL 180 KEDNIRLHKE LQELKIMKQA PKAPFYRQFP TATLTVCPSC SERICNGTSS STADHHPGVS 240 KPHLFNPFTH PSTAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	165	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22800.1	5e-63	HD-ZIP family protein