PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G04437

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 278aa MW: 30626.5 Da PI: 6.3788

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G04437	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.5	3.5e-14	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd l+ + + +G+g +W +++ g++R++k+c++rw++yl Ro02_G04437 14 KGQWSPEEDAALKTYLETHGTGgNWIHLPQKAGLRRCGKSCRLRWLNYL 62 799********************************************97 PP
2	Myb_DNA-binding	49.8	7.6e-16	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ + +q+G++ W+ Ia++m+ gRt++++k++w++ Ro02_G04437 69 GGFTEEEDNIICTLYTQMGSR-WSIIASHMP-GRTDNDVKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence
MGRAPCCDKA NVKKGQWSPE EDAALKTYLE THGTGGNWIH LPQKAGLRRC GKSCRLRWLN 60 YLRPNIKHGG FTEEEDNIIC TLYTQMGSRW SIIASHMPGR TDNDVKNYWN TKLKKRFLPP 120 KQCLTANDCE NPNASSLTLP CVPKVETHDD QFQTQTPATL QMLSDVNSGL NAYNPSPSLN 180 PNPLCNSKLM DLSQFGATSV SLSQDGSSIS DSCSIATVDK CGLLHGNGFI NEDAGISMDF 240 GFGGLPYDIV NQMWFGEKAS EVVHPTCSTS FEGDFIFC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65790.1	1e-72	MYB family protein