PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G04483
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family LBD
Protein Properties Length: 146aa    MW: 16214 Da    PI: 11.3949
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G04483genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26046.51.1e-1423952797
       DUF260 27 pkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97
                 ++ f +vhk+FG s+++k++k+l   +++r++am+ ++ eA+ r+ +Pv  ++g i+kl+++++++++el +l
  Ro02_G04483 23 QNVFLIVHKVFGGSHLTKFVKNLadFPHKRSTAMKHITAEADLRIAEPVGASFGAISKLRRNIAEEEKELRRL 95
                 6889*******************666899***************************************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    
MDRLLSISSI STKLVPLANT IAQNVFLIVH KVFGGSHLTK FVKNLADFPH KRSTAMKHIT  60
AEADLRIAEP VGASFGAISK LRRNIAEEEK ELRRLRLVLG VYRGVQGNIF DLRFVPVTTM  120
AFTVQERAVT LKARPSQFIS LAIGQT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.22e-10LBD family protein