PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G04489

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 527aa MW: 57764.2 Da PI: 8.7529

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G04489	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	88	110	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Ro02_G04489 88 FVCEVCNKGFQREQNLQLHRRGH 110 89*******************88 PP
2	zf-C2H2	12.4	0.00048	164	186	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + Ro02_G04489 164 WKCEKCSKRYAVQSDWKAHSKIC 186 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence
MQPTNYQQGG NQLIMMKGFA VDENMSNLTC ASGDLSASAN SSIRNESSSS THQQQPTQKK 60 KRNLPGNPDP DAEVIALSPK SLMATNRFVC EVCNKGFQRE QNLQLHRRGH NLPWKLKQRT 120 NKEVKKKVYL CPEPTCVHHD PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KRYAVQSDWK 180 AHSKICGTRE YRCDCGTLFS RRDSFITHRA FCDALAQENS NAARAMNPLN LSSSSLPQLH 240 GGFQPHLSHH HVKREVQDLQ LQLPLWMGGE AAPPAGPSHH LHSNINLSSS SSQLFSTSSF 300 DHQQSFLHQN PNPSSSAGLP DFQTAASAHM SATALLQKAS EMGATVSKPS SMFLKPRNQQ 360 HQTSHMMSET TAFGSFMEQA GANSGGGAAA ATNNSLLHDM MMMSSQMQQS SSAAHGGFGD 420 NINPPPQKKL ITAESQLRRT SSTADGGGGG GGGGGMNEGM TRDFLGLRAF SSQDDQDFFD 480 MAAAHGLDQH VVNSTSSGNY NGQQHNHQNQ TSWQERDYRV IVENMDF

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence

MQPTNYQQGG NQLIMMKGFA VDENMSNLTC ASGDLSASAN SSIRNESSSS THQQQPTQKK  60
KRNLPGNPDP DAEVIALSPK SLMATNRFVC EVCNKGFQRE QNLQLHRRGH NLPWKLKQRT  120
NKEVKKKVYL CPEPTCVHHD PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KRYAVQSDWK  180
AHSKICGTRE YRCDCGTLFS RRDSFITHRA FCDALAQENS NAARAMNPLN LSSSSLPQLH  240
GGFQPHLSHH HVKREVQDLQ LQLPLWMGGE AAPPAGPSHH LHSNINLSSS SSQLFSTSSF  300
DHQQSFLHQN PNPSSSAGLP DFQTAASAHM SATALLQKAS EMGATVSKPS SMFLKPRNQQ  360
HQTSHMMSET TAFGSFMEQA GANSGGGAAA ATNNSLLHDM MMMSSQMQQS SSAAHGGFGD  420
NINPPPQKKL ITAESQLRRT SSTADGGGGG GGGGGMNEGM TRDFLGLRAF SSQDDQDFFD  480
MAAAHGLDQH VVNSTSSGNY NGQQHNHQNQ TSWQERDYRV IVENMDF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-108	C2H2 family protein