PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G04540

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

M-type_MADS

Protein Properties

Length: 980aa MW: 111179 Da PI: 7.6801

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G04540	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	25.3	2e-08	19	57	9	46
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE.E-TTSEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevavii.fsstgkl 46 r+ + kR++ + KK ELS LCd+ v++i+ ++++g++ Ro02_G04540 19 RELALMKRKHKLKKKVWELSALCDVMVSMIVnIGPDGQV 57 77889***********************99867999886 PP

Sequence ? help Back to Top
Protein Sequence Length: 980 aa Download sequence
MAPKVPKMKN FLDRANEYRE LALMKRKHKL KKKVWELSAL CDVMVSMIVN IGPDGQVAKD 60 NQEDVKARLV EYCPRKRLLD QSDFVEVAVE EIKKRTMDID CNWLPSEETR EMWKCLESQL 120 HDVIQKTALT HRFDSAMAVQ FKFRSSVNFD SVDIEGRTSI SVRDLKAKII RHKNLDICQD 180 SDLVFSDAIT GQEYTNENIQ IPCGSSVIIK RVPAGSVHVD MPHFNSYQNL HSKDSGNAKS 240 HAPLNLYVSQ NVETVDFDDF GVDMYPGPEA TFFGSDLDAD KYTCRPGYEP NTGITRCLEP 300 AVGGCEKLEA SGLSDVIPGS HSHGGVEQTI PQTKSEPEVQ EDLNVEKMGS GDPLDTKHAD 360 LPSEMKCSLC NSFFKEAVMI PCCQHSIRQV LLEKARCPKC FSIKSRVEDL LPNISLRQAI 420 EHFLESQNVI TVPDNAFCQY APDGESGIQA KDVFCGGTSL QRELELPHSP ETGMGSNNWL 480 AESACNPPFK KDAPYHFGAR NIQTFPPFLH KNNQIDGETH GSTRLVPDGS AAFDDFQGEN 540 MPMHEEAKPA SKKKRPPWVY TAGGDKSFLE TGRHRKGDRT CYMCGSPDHF IRECPVASSP 600 RPMLHAGNAI FPGAMPGYVP PYWDGAPLPH APPFRNLYRN HGMTAFDTML IPRAPFSVPP 660 FMPSMYRSIP GFGGYMGMGG VAPLPGTGED CYISRSEFLD LQCQEKRRKL SEENLRRDQS 720 LDHDDDDWER HHYNGTARLQ EHKSCVNREN NVSYSSDGMH SVDGHRKSSR LEVGHRDEKL 780 YHRTEKSSSE IDDMPSSSSW HSEEKHKHYH RTSRKQNERR EQCGSDYSVE KHKYYHRSSR 840 NQKERRKQCG SDSSRSHRQN ISEKDDKRKR IQHDFKKRQK HHSNSGSGLE HSVSSDKKLQ 900 KGSSHNSRKS KHNVKSNVDE RSHDRWKMVS GSDEDGAEAY RYSKRKRVDI CLPSPNTPNA 960 KQPNTRIFTK WLFQEVAEKA

Sequence ? help Back to Top

Protein Sequence Length: 980 aa Download sequence

MAPKVPKMKN FLDRANEYRE LALMKRKHKL KKKVWELSAL CDVMVSMIVN IGPDGQVAKD  60
NQEDVKARLV EYCPRKRLLD QSDFVEVAVE EIKKRTMDID CNWLPSEETR EMWKCLESQL  120
HDVIQKTALT HRFDSAMAVQ FKFRSSVNFD SVDIEGRTSI SVRDLKAKII RHKNLDICQD  180
SDLVFSDAIT GQEYTNENIQ IPCGSSVIIK RVPAGSVHVD MPHFNSYQNL HSKDSGNAKS  240
HAPLNLYVSQ NVETVDFDDF GVDMYPGPEA TFFGSDLDAD KYTCRPGYEP NTGITRCLEP  300
AVGGCEKLEA SGLSDVIPGS HSHGGVEQTI PQTKSEPEVQ EDLNVEKMGS GDPLDTKHAD  360
LPSEMKCSLC NSFFKEAVMI PCCQHSIRQV LLEKARCPKC FSIKSRVEDL LPNISLRQAI  420
EHFLESQNVI TVPDNAFCQY APDGESGIQA KDVFCGGTSL QRELELPHSP ETGMGSNNWL  480
AESACNPPFK KDAPYHFGAR NIQTFPPFLH KNNQIDGETH GSTRLVPDGS AAFDDFQGEN  540
MPMHEEAKPA SKKKRPPWVY TAGGDKSFLE TGRHRKGDRT CYMCGSPDHF IRECPVASSP  600
RPMLHAGNAI FPGAMPGYVP PYWDGAPLPH APPFRNLYRN HGMTAFDTML IPRAPFSVPP  660
FMPSMYRSIP GFGGYMGMGG VAPLPGTGED CYISRSEFLD LQCQEKRRKL SEENLRRDQS  720
LDHDDDDWER HHYNGTARLQ EHKSCVNREN NVSYSSDGMH SVDGHRKSSR LEVGHRDEKL  780
YHRTEKSSSE IDDMPSSSSW HSEEKHKHYH RTSRKQNERR EQCGSDYSVE KHKYYHRSSR  840
NQKERRKQCG SDSSRSHRQN ISEKDDKRKR IQHDFKKRQK HHSNSGSGLE HSVSSDKKLQ  900
KGSSHNSRKS KHNVKSNVDE RSHDRWKMVS GSDEDGAEAY RYSKRKRVDI CLPSPNTPNA  960
KQPNTRIFTK WLFQEVAEKA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	867	901	KRKRIQHDFKKRQKHHSNSGSGLEHSVSSDKKLQK