PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G04542
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB
Protein Properties Length: 293aa    MW: 32326.1 Da    PI: 5.4872
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G04542genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.6e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed+ l  ++k +G g W+  +++ g++R++k+c++rw++yl
      Ro02_G04542 14 RGAWTALEDKVLTSYIKAHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding48.42.1e-1567111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ 
      Ro02_G04542  67 RGNISGDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111
                      6777889***************.*********.************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MGRSPCCSKE GMNRGAWTAL EDKVLTSYIK AHGEGKWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SGDEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT TLAKKAKPDS  120
NSGSSKETSP APTRFRPKKP SASSSAAATS QPQVIRTKAT RLTKVLVPSL PLLIDDYSAP  180
TTRLDLQVPQ TQFVNSLPGD AVNTEVHCGS TTEEFQAGTD AMNFGCNGFQ ATAGDDDDDD  240
AKGEYNIPLD EGMLNDWTGN DNCDLENYGA SLDLDSLAFL LDSEDWLDRE NSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.11e-62MYB family protein