PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G04545

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 261aa MW: 29576.7 Da PI: 4.8893

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G04545	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22	3.7e-07	14	49	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+ Ed++l d+vk++G + R++k++++rw++yl Ro02_G04545 14 KGVWTAREDQILTDYVKKHGLR------------RCGKSVRLRWLNYL 49 799*****************55............89999999999997 PP
2	Myb_DNA-binding	49.6	9.4e-16	55	99	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E+ l+++++k+lG++ W++Ia +++ gRt++++k++w++ Ro02_G04545 55 RGNISEDEEALIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNST 99 7899****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence
MGRSSRFEKE GLKKGVWTAR EDQILTDYVK KHGLRRCGKS VRLRWLNYLR PDIKRGNISE 60 DEEALIIRLH KLLGNRWSLI AGRIPGRTDN EIKNYWNSTL RRKLQQENHS EVSRNEMKED 120 LSSPAGSAAA EDYPHLTRNN EGGMITQSSL FCFTNNNVKE EEPQQHHLES SITTTNNNTT 180 LMSGDTVGVE AVTKNDVELG GDDLSDDVTW NDFIMDLNEG QLDISEFLQT DFLKLCESES 240 SMNIDVGGCS TSNHELPNNS D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	1e-49	MYB family protein