PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G04546

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 216aa MW: 24832.1 Da PI: 6.5307

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G04546	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.9	4.7e-08	15	43	1	29
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 +g+WT+ Ed++l d+vk++G g W + r Ro02_G04546 15 KGAWTALEDQILRDYVKEHGEGKWGKMLR 43 79**********************88765 PP
2	Myb_DNA-binding	54.7	2.3e-17	54	98	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ Ro02_G04546 54 RGNITEDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNST 98 7999****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence
MGRSSRCDTE KGANKGAWTA LEDQILRDYV KEHGEGKWGK MLRWLNYLRP DIKRGNITED 60 EEELIIRLHK LLGNRWSLIA GRLPGRTDNE IKNYWNSTLR KKQENNSKRS RNERKHLKDS 120 QLTKDEITPT SSTINELAEP FLFGVEAKKI KAEPDSGDRF LPTIGESDMA WNFIMELDAG 180 QLSISEFLHT DFSKLCELNT MFVNCTNGAE MGPLEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	6e-45	MYB family protein