PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G04549

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 217aa MW: 24988.1 Da PI: 9.1911

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G04549	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	63.2	5e-20	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l ++++ +G++ Wk+Ia + g++R++k+c++rw +yl Ro02_G04549 13 RGSWTAEEDQKLSQVIEIHGPRKWKSIATKAGLNRCGKSCRLRWMNYL 60 89********************************************97 PP
2	Myb_DNA-binding	50.6	4.5e-16	66	111	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l Ro02_G04549 66 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 111 78999***************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence
MVPLSSKNKE VNRGSWTAEE DQKLSQVIEI HGPRKWKSIA TKAGLNRCGK SCRLRWMNYL 60 RPNIKRGNIS DQEEDLILRL HKLLGNRWSL IAGRLPGRTD NEIKNYWNSH LSKKMKHNER 120 SQNRNRVLVS TSSSAAAQEL SEPQNAKLME GNDVIIGRED NNSKRDESYF KSMSFNGSSS 180 GDEFLFGCSN ADEGPLNLEW MNRFLEMDES WFTLHDI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14750.1	1e-55	MYB family protein