PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G05492
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 271aa    MW: 29532.9 Da    PI: 6.7668
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G05492genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH171e-051611991154
                  HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +RR+++ +++++L++l+ +      +K + a++L +A+ YI+ L
  Ro02_G05492 161 KRREKLGERISTLQQLVSPF-----GKTDTASVLHEAMGYIRFL 199
                  7******************8.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
MAEKEGFEVD QLGVLEGTSF SQLLFEVEHD VVGLCVDDHQ NQIFNYYNNS NCSSLYSAAD  60
LKSPKMLCFG DFQNNNNAEI GFPEISRPPP KSGVTCSDSS SVSSTSKSTS TKALSSSKSS  120
NKKRNGLAQE LVQCASTTTV AGQRSSKKSK TDKPAPAGNG KRREKLGERI STLQQLVSPF  180
GKTDTASVLH EAMGYIRFLH DQVQVLCSPY LQRLPSLPDG EEEKKEEATS NDLRSRGLCL  240
VPMDCTAHVA NNNGADFWSP ATMAHRRPDT N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.14e-44bHLH family protein