PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G06605

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Protein Properties

Length: 693aa MW: 76872.9 Da PI: 6.3323

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G06605	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	64.3	1.9e-20	558	654	2	95
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 +kvl++sdv+++gr+vlpkk ae+h +++ + ++ + +ed ++r+W+++++y ++ks++y+l+ ++ +Fv+angL+egDf+v++ ++ ++ +++ Ro02_G06605 558 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISIPMEDiGTSRVWNMRYRYwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIY--SDvKCNKYM 652 79***********************999999****7778*****777777777777.******************..555888777 PP EE CS B3 94 vk 95 ++ Ro02_G06605 653 IR 654 66 PP

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence
MEGVHAADRS LIGKQVDFGE DGDAADLWLD NDQDSLLADV NDGTASIFCN DFPPLPDFPC 60 MSSSSSSSST RAPLKTMSSS SSSSSASSSS SAASWAVLKS DAEDNHYSNR QDYHEQQDHP 120 AGALSSTASM EISQPSDLGM DCMDVMETFG YMDLFEGNQF FDPSSIFQND NPMMDQFQSQ 180 DDQPPQQQVH AENQTPPPQE NIQNTNGQED DMASVFLEWL RSNREMVSAE DLRSVKIKKS 240 TIECAARRLG GGKEAMKQLL KLVLEWVQTN HLPKRRSTKD SGIQQYPVDP FQNPNPNPNV 300 NPAQSSPWMQ SPQYDAAAPI LVPTPPQTSY PATPMAGFMG QDPFGNGPGY QQQASDQYQH 360 HMLETSPTWP PSSPFVGNNY GSFPDNNIQL APPPHPQAFS GFGGQFSQYQ YFQGQSGEPQ 420 LVRLGSSATK EARKKRMQRQ RRTLSHHHGR HPVHQQNQHP NQMPDQQFVG NADHNCTTAA 480 MANPAAANWF YWPTAAPGGP APTASPSVIQ SMAPEAPPML QVDRPASQGQ NYNSSRINVQ 540 ERRQGWKPEN KNLRFLLQKV LKQSDVGNLG RIVLPKKEAE THLPELEARD GISIPMEDIG 600 TSRVWNMRYR YWPNNKSRMY LLENTGDFVR ANGLQEGDFI VIYSDVKCNK YMIRGVKVRQ 660 SGTKSETKRP GKSQRNQHAS TASGNNGSSS KKQ

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence

MEGVHAADRS LIGKQVDFGE DGDAADLWLD NDQDSLLADV NDGTASIFCN DFPPLPDFPC  60
MSSSSSSSST RAPLKTMSSS SSSSSASSSS SAASWAVLKS DAEDNHYSNR QDYHEQQDHP  120
AGALSSTASM EISQPSDLGM DCMDVMETFG YMDLFEGNQF FDPSSIFQND NPMMDQFQSQ  180
DDQPPQQQVH AENQTPPPQE NIQNTNGQED DMASVFLEWL RSNREMVSAE DLRSVKIKKS  240
TIECAARRLG GGKEAMKQLL KLVLEWVQTN HLPKRRSTKD SGIQQYPVDP FQNPNPNPNV  300
NPAQSSPWMQ SPQYDAAAPI LVPTPPQTSY PATPMAGFMG QDPFGNGPGY QQQASDQYQH  360
HMLETSPTWP PSSPFVGNNY GSFPDNNIQL APPPHPQAFS GFGGQFSQYQ YFQGQSGEPQ  420
LVRLGSSATK EARKKRMQRQ RRTLSHHHGR HPVHQQNQHP NQMPDQQFVG NADHNCTTAA  480
MANPAAANWF YWPTAAPGGP APTASPSVIQ SMAPEAPPML QVDRPASQGQ NYNSSRINVQ  540
ERRQGWKPEN KNLRFLLQKV LKQSDVGNLG RIVLPKKEAE THLPELEARD GISIPMEDIG  600
TSRVWNMRYR YWPNNKSRMY LLENTGDFVR ANGLQEGDFI VIYSDVKCNK YMIRGVKVRQ  660
SGTKSETKRP GKSQRNQHAS TASGNNGSSS KKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	1e-84	B3 family protein