PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G07057
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NF-YB
Protein Properties Length: 183aa    MW: 20717 Da    PI: 6.5151
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G07057genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB174.51.1e-5436131297
        NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                  +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wal+tlGf+dy eplk yl+++relegek
  Ro02_G07057  36 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALSTLGFDDYSEPLKRYLHRFRELEGEK 131
                  89********************************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    
MVDNIGNNNN NISSDPREGF NYNFTGDGHH HDEVIKEQDR LLPIANVGRI MKQILPPNAK  60
ISKEAKETMQ ECVSEFISFV TGEASDKCHK EKRKTVNGDD ICWALSTLGF DDYSEPLKRY  120
LHRFRELEGE KAQHSKANSG GEDQRNEVVE VSPTRATVTS SSTPFMKFNV INERGNSSIP  180
RRF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.17e-63NF-YB family protein