PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G07996

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 1011aa MW: 114791 Da PI: 5.8516

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G07996	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.6	5.2e-09	60	109	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL +l ++ +K++Ka+iL +++ +k+L Ro02_G07996 60 RKMQKADREKLRRDRLNEHFLELGNVLDPD----RPKNDKATILADTIQVLKDL 109 5778899*****************9997....79*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 1011 aa Download sequence
MQTIMDKLKP EAFIQTAPNP FPSATEFPQP SFDSLLPSTR SIPNSGQMPE GEIKNGLAAR 60 KMQKADREKL RRDRLNEHFL ELGNVLDPDR PKNDKATILA DTIQVLKDLS SEVDKLKTEC 120 TSLTEESREL THEKNDLREE KASLKSDIEN LNAQYQQRLR SMFPWGAVDH SVVMAPPSYP 180 FPMPMPMPPG SIPMHPHMQP YPYYGNQNPG VIPNPCSTFV PYINPNTLVE QQPAPYLSPV 240 VHPASQSQVS VKQDSRNKLS GESRIDRSED SNDVMTELEL KTPGSTTDQD LSPVQRKSQK 300 SARKELKVTE ATSSSRCSSS HSVQGSSSNS VASPYITVEK DCDPLSSPRN EHSRSKQEET 360 VITLRPNCYL RLLRMAAIQI LKSSCVFLTT KPKPLLSLSY FSSSSSSSAP SDQTPSEPNP 420 LIPSVVSILT QLRSKSRWGY LRTLYPDGFN PNDFSQIVLQ IKNNPHLALR FFQWTQTKSL 480 CSHNLHSYST VIHILARSRL KSQAYSLIGD AIREVSEPLQ VFETLVKTYR QCGSAPFVFD 540 YLIKACLEAK KIDPAIQIVR MLLSRGISPG LSTCNALIRC ISQRQGAYAG YEIYREIFGL 600 DGQVLEKIAK RVARTSPNVQ TFNELMLGFY QDGEVEMVKD IWDQMAESNC CPDVYTYSIL 660 LETCCEEEKM SKAEELWEQM RAKSVEPDAV AYNTMIGGFC KVGEIEMAEE FFKQMGLSGI 720 ESTSATYEHL IRGYCKIGNI DSAMLLYKDM LRKDFRPESS TVDEFIQGLC DESRVSEALE 780 VMRAAMLDYG FCPREKCYEF LIRGLCEQGK LEEALKLQAQ MVGKGFKLNS EIYNAFISGY 840 MKEGNEEVAE LLRNEMLDTQ LNWWTYSVNE CYHNYYLQQR PEGEIKDGLA ARKIQKADWE 900 KLRRDQLNEH FLMLGNADPK MTKQPTILAD TIQVLKDMSS EVDKLKAECS LLIEEFRELT 960 REQNDPREEN TSLISNIENL NGQYQQTQDF VLKIFAGLKR SQVSLWFRHW P

Sequence ? help Back to Top

Protein Sequence Length: 1011 aa Download sequence

MQTIMDKLKP EAFIQTAPNP FPSATEFPQP SFDSLLPSTR SIPNSGQMPE GEIKNGLAAR  60
KMQKADREKL RRDRLNEHFL ELGNVLDPDR PKNDKATILA DTIQVLKDLS SEVDKLKTEC  120
TSLTEESREL THEKNDLREE KASLKSDIEN LNAQYQQRLR SMFPWGAVDH SVVMAPPSYP  180
FPMPMPMPPG SIPMHPHMQP YPYYGNQNPG VIPNPCSTFV PYINPNTLVE QQPAPYLSPV  240
VHPASQSQVS VKQDSRNKLS GESRIDRSED SNDVMTELEL KTPGSTTDQD LSPVQRKSQK  300
SARKELKVTE ATSSSRCSSS HSVQGSSSNS VASPYITVEK DCDPLSSPRN EHSRSKQEET  360
VITLRPNCYL RLLRMAAIQI LKSSCVFLTT KPKPLLSLSY FSSSSSSSAP SDQTPSEPNP  420
LIPSVVSILT QLRSKSRWGY LRTLYPDGFN PNDFSQIVLQ IKNNPHLALR FFQWTQTKSL  480
CSHNLHSYST VIHILARSRL KSQAYSLIGD AIREVSEPLQ VFETLVKTYR QCGSAPFVFD  540
YLIKACLEAK KIDPAIQIVR MLLSRGISPG LSTCNALIRC ISQRQGAYAG YEIYREIFGL  600
DGQVLEKIAK RVARTSPNVQ TFNELMLGFY QDGEVEMVKD IWDQMAESNC CPDVYTYSIL  660
LETCCEEEKM SKAEELWEQM RAKSVEPDAV AYNTMIGGFC KVGEIEMAEE FFKQMGLSGI  720
ESTSATYEHL IRGYCKIGNI DSAMLLYKDM LRKDFRPESS TVDEFIQGLC DESRVSEALE  780
VMRAAMLDYG FCPREKCYEF LIRGLCEQGK LEEALKLQAQ MVGKGFKLNS EIYNAFISGY  840
MKEGNEEVAE LLRNEMLDTQ LNWWTYSVNE CYHNYYLQQR PEGEIKDGLA ARKIQKADWE  900
KLRRDQLNEH FLMLGNADPK MTKQPTILAD TIQVLKDMSS EVDKLKAECS LLIEEFRELT  960
REQNDPREEN TSLISNIENL NGQYQQTQDF VLKIFAGLKR SQVSLWFRHW P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.2	1e-79	bHLH family protein