PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G08057

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

M-type_MADS

Protein Properties

Length: 473aa MW: 52829.3 Da PI: 9.1183

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G08057	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	68.1	8.3e-22	37	82	4	49
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 n+sn qvtfskRr g++KKA+EL++LC+ae+a+i+fs+ k++ + Ro02_G08057 37 ANDSNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGRKVFSF 82 699************************************9999877 PP
2	SRF-TF	67.4	1.4e-21	261	308	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i +n qvtfskRr g++KKA+EL++LC++eva+i+fs+ k y + Ro02_G08057 261 KIAKRTNLQVTFSKRRSGLFKKASELCTLCGVEVAIIVFSPAKKPYSF 308 577899***********************************9987776 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MTTILDRIGE AHNVTGEVVA MVRKSKGRQK VEMVKMANDS NLQVTFSKRR SGLFKKASEL 60 CTLCGAEIAI IVFSPGRKVF SFGHPCVETV IDRFLSRNPP PHHQSSGTMQ LIEAHRNANV 120 RELNAELTQA SNELETERKR GEELNRVRRA SQGHCWWESP VEEMEMSQCE QLAGSLDELK 180 KFVAKQADRL LIQTTNPNPF FAAGSSAHPS LMPNVVFNGM PVMPSHHPHP HPWNPGYGLF 240 TMMMKKTNKS SQGRQKIPIA KIAKRTNLQV TFSKRRSGLF KKASELCTLC GVEVAIIVFS 300 PAKKPYSFGH PGVDSLLDRF LARNPNFNIF PADSSLQLGE VHKYASAHEL NMQLTRISNQ 360 VEAERKRGES LDKMSKASEC WWENPVDELG LDELQILKAA MEDLKKNVND QANRIWMKSS 420 NTTTTANYSA SFLVMNNAHH LFESSPSSDQ VGSGSINIPS AHDICSAWNI GLF

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MTTILDRIGE AHNVTGEVVA MVRKSKGRQK VEMVKMANDS NLQVTFSKRR SGLFKKASEL  60
CTLCGAEIAI IVFSPGRKVF SFGHPCVETV IDRFLSRNPP PHHQSSGTMQ LIEAHRNANV  120
RELNAELTQA SNELETERKR GEELNRVRRA SQGHCWWESP VEEMEMSQCE QLAGSLDELK  180
KFVAKQADRL LIQTTNPNPF FAAGSSAHPS LMPNVVFNGM PVMPSHHPHP HPWNPGYGLF  240
TMMMKKTNKS SQGRQKIPIA KIAKRTNLQV TFSKRRSGLF KKASELCTLC GVEVAIIVFS  300
PAKKPYSFGH PGVDSLLDRF LARNPNFNIF PADSSLQLGE VHKYASAHEL NMQLTRISNQ  360
VEAERKRGES LDKMSKASEC WWENPVDELG LDELQILKAA MEDLKKNVND QANRIWMKSS  420
NTTTTANYSA SFLVMNNAHH LFESSPSSDQ VGSGSINIPS AHDICSAWNI GLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	8e-72	M-type_MADS family protein