PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G08747
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family Whirly
Protein Properties Length: 227aa    MW: 25293.2 Da    PI: 10.2391
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G08747genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly188.31.3e-58531871137
       Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkveP 98 
                  s+yk+kaal++ +v+ptf++ldsg+l+++r+G+++l++++a++erkyd ek+q falsatev++l++l++k+sce+fhdp++++s++G+vrk+l+++P
  Ro02_G08747  53 SIYKGKAALSLTPVLPTFTKLDSGSLVVDRRGSVMLKFMPAIGERKYDSEKRQLFALSATEVGSLISLGPKDSCELFHDPSMQSSKSGEVRKSLSIKP 150
                  7************************************************************************************************* PP

       Whirly  99 lpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                  ++dG  +f++l+v n+l+k+ esfsvPv+ aefav++++
  Ro02_G08747 151 HADG--YFISLTVVNNLLKTRESFSVPVTTAEFAVIKTA 187
                  ***5..9*****************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MMKLLRLFSS RNQLSKRHAL SLDAFTQSTS FSTARQNFSA KGRIGDQVYA PFSIYKGKAA  60
LSLTPVLPTF TKLDSGSLVV DRRGSVMLKF MPAIGERKYD SEKRQLFALS ATEVGSLISL  120
GPKDSCELFH DPSMQSSKSG EVRKSLSIKP HADGYFISLT VVNNLLKTRE SFSVPVTTAE  180
FAVIKTACSF ALPHIMGWDR LTNKVPRGIE VHESKMVEPQ LLDEWER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.19e-88Whirly family protein