PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G09597

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

ARF

Protein Properties

Length: 670aa MW: 74887.8 Da PI: 7.1484

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G09597	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	79.6	3.3e-25	127	232	1	99
EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+ltpsd++++g +++pk++aee+ + ++ ++l +d++g +W +++i+r++++r++lt+GW+ Fv a++L gD ++F + Ro02_G09597 127 FSKILTPSDTSTHGGFSVPKRHAEECfpplmflqemlQ--QPPVQELAAKDLHGVEWHFRHIFRGQPKRHLLTSGWSTFVTAKKLVPGDACIFV--RG 220 88*******************************654..444458********************************************..44 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++el+v+++r+ Ro02_G09597 221 ENGELRVGIRRA 232 9999****97 PP
2	Auxin_resp	100.4	2.4e-33	257	339	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a ha+st+++F+v+Y+P++s++ F++++++++k+ k +svGm+f+m fe+e+++e+r+ Gt+++++d d +rWp S+Wr+Lk Ro02_G09597 257 AFHAISTGTIFTVYYRPWTSPAPFIIPFDQYMKSAKDDYSVGMKFRMWFEGEECAEKRFEGTIIDIEDKDCIRWPSSEWRCLK 339 689******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence
MAGDHQRSAY PVNNGQGEED DLYAQLWHTC AGSNVYVPRP GEKVFYFPQG HIEQVEAYAD 60 PEGNVAMPKY NLPSKILCHV VYVQLKAEVH TDEVFAQITL LPVTEQDHLS FEDENTPSLP 120 HRTRTSFSKI LTPSDTSTHG GFSVPKRHAE ECFPPLMFLQ EMLQQPPVQE LAAKDLHGVE 180 WHFRHIFRGQ PKRHLLTSGW STFVTAKKLV PGDACIFVRG ENGELRVGIR RATKTQDNAT 240 ASLISGHSMQ HGILASAFHA ISTGTIFTVY YRPWTSPAPF IIPFDQYMKS AKDDYSVGMK 300 FRMWFEGEEC AEKRFEGTII DIEDKDCIRW PSSEWRCLKV QWDTTSDTLL HSERLSPWNI 360 KPAESTNKKK TCFPLPPHKR ACMPDPSSAG LSGLARNGLF PLTKPQRQKR VFQGQEISET 420 HAHELGAPMH DPLHQCPRSS TELSSENMVT PSYTNQWTPV FTPFGVVDSV PFSRSMSVPN 480 INSSESQELR AFKPRSETQG PFIPPNTLML FGVNLDSSHS ELPSPQVANY SGLLSPCSIP 540 PISQSSVSET IQLSETSKSI SCVLSEKQCK KCCSVSNRSC IKVLKHGSAL GRSLDLTRFD 600 GYGDLICELD QMFDFEGSLI DGSSGWQRIP VNGAKNVHLS KGSRNQQPES KLTKCNIPLS 660 FSSSVHMKEK

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence

MAGDHQRSAY PVNNGQGEED DLYAQLWHTC AGSNVYVPRP GEKVFYFPQG HIEQVEAYAD  60
PEGNVAMPKY NLPSKILCHV VYVQLKAEVH TDEVFAQITL LPVTEQDHLS FEDENTPSLP  120
HRTRTSFSKI LTPSDTSTHG GFSVPKRHAE ECFPPLMFLQ EMLQQPPVQE LAAKDLHGVE  180
WHFRHIFRGQ PKRHLLTSGW STFVTAKKLV PGDACIFVRG ENGELRVGIR RATKTQDNAT  240
ASLISGHSMQ HGILASAFHA ISTGTIFTVY YRPWTSPAPF IIPFDQYMKS AKDDYSVGMK  300
FRMWFEGEEC AEKRFEGTII DIEDKDCIRW PSSEWRCLKV QWDTTSDTLL HSERLSPWNI  360
KPAESTNKKK TCFPLPPHKR ACMPDPSSAG LSGLARNGLF PLTKPQRQKR VFQGQEISET  420
HAHELGAPMH DPLHQCPRSS TELSSENMVT PSYTNQWTPV FTPFGVVDSV PFSRSMSVPN  480
INSSESQELR AFKPRSETQG PFIPPNTLML FGVNLDSSHS ELPSPQVANY SGLLSPCSIP  540
PISQSSVSET IQLSETSKSI SCVLSEKQCK KCCSVSNRSC IKVLKHGSAL GRSLDLTRFD  600
GYGDLICELD QMFDFEGSLI DGSSGWQRIP VNGAKNVHLS KGSRNQQPES KLTKCNIPLS  660
FSSSVHMKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62000.3	1e-152	ARF family protein